#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00814/HGDP00814.cram --algo AlignmentStat HGDP/HGDP00814/QCmetrics/HGDP00814.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	441072318	441072318	1.000000	0	439839007	0.997204	65721349611	412531936	61977406162	60828277204	0.000000	0.004489	0.003833	0.000222	151.000000	438224333	0.996329	0	0.499973	0.019842	0.000006	
SECOND_OF_PAIR	441072318	441072318	1.000000	0	438272208	0.993652	64314390905	410052712	60769576154	57205160655	0.000000	0.010129	0.009438	0.000211	151.000000	438224333	0.999891	0	0.499509	0.021409	0.002512	
PAIR	882144636	882144636	1.000000	0	878111215	0.995428	130035740516	822584648	122746982316	118033437859	0.000000	0.007278	0.006608	0.000216	151.000000	876448666	0.998107	0	0.499741	0.020624	0.001259