#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00819/HGDP00819.cram --algo AlignmentStat HGDP/HGDP00819/QCmetrics/HGDP00819.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	454969007	454969007	1.000000	0	454515597	0.999003	67897901164	424790930	63789646579	62529455141	0.000000	0.004653	0.003931	0.000221	151.000000	453288982	0.997301	0	0.499961	0.019534	0.000002	
SECOND_OF_PAIR	454969007	454969007	1.000000	0	453325967	0.996389	66615148056	422785005	62715221109	59355686379	0.000000	0.009359	0.008590	0.000211	151.000000	453288982	0.999918	0	0.499558	0.021409	0.000742	
PAIR	909938014	909938014	1.000000	0	907841564	0.997696	134513049220	847575935	126504867688	121885141520	0.000000	0.006983	0.006241	0.000216	151.000000	906577964	0.998608	0	0.499760	0.020471	0.000372