#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00820/HGDP00820.cram --algo AlignmentStat HGDP/HGDP00820/QCmetrics/HGDP00820.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	392306618	392306618	1.000000	0	391469996	0.997867	58462933369	368119047	55248856592	54140919472	0.000000	0.004663	0.004041	0.000222	151.000000	390300906	0.997014	0	0.499981	0.020189	0.000007	
SECOND_OF_PAIR	392306618	392306618	1.000000	0	390345398	0.995001	57339895756	366225351	54270935300	51269588972	0.000000	0.009662	0.009007	0.000213	151.000000	390300906	0.999886	0	0.499571	0.022768	0.001767	
PAIR	784613236	784613236	1.000000	0	781815394	0.996434	115802829125	734344398	109519791892	105410508444	0.000000	0.007138	0.006502	0.000217	151.000000	780601812	0.998448	0	0.499776	0.021477	0.000887