#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00821/HGDP00821.cram --algo AlignmentStat HGDP/HGDP00821/QCmetrics/HGDP00821.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	438984235	438984235	1.000000	0	438664121	0.999271	65599421098	410675851	61717086880	60684756550	0.000000	0.004467	0.003744	0.000222	151.000000	437534985	0.997426	0	0.499890	0.019650	0.000001	
SECOND_OF_PAIR	438984235	438984235	1.000000	0	437568124	0.996774	64499830442	408783016	60789078138	57809975644	0.000000	0.009254	0.008483	0.000212	151.000000	437534985	0.999924	0	0.499618	0.021178	0.000506	
PAIR	877968470	877968470	1.000000	0	876232245	0.998022	130099251540	819458867	122506165018	118494732194	0.000000	0.006840	0.006095	0.000217	151.000000	875069970	0.998674	0	0.499754	0.020413	0.000254