#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00822/HGDP00822.cram --algo AlignmentStat HGDP/HGDP00822/QCmetrics/HGDP00822.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	764445045	764445045	1.000000	0	763933696	0.999331	114236907452	717728170	107832039791	105709444669	0.000000	0.004796	0.004142	0.000221	151.000000	758902545	0.993414	0	0.499941	0.018699	0.000002	
SECOND_OF_PAIR	764445045	764445045	1.000000	0	758953033	0.992816	110912668048	710886622	104842409879	96874580948	1.000000	0.013223	0.012555	0.000209	151.000000	758902545	0.999933	0	0.499501	0.020111	0.000433	
PAIR	1528890090	1528890090	1.000000	0	1522886729	0.996073	225149575500	1428614792	212674449670	202584025617	0.000000	0.008947	0.008289	0.000215	151.000000	1517805090	0.996663	0	0.499722	0.019403	0.000218