#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00823/HGDP00823.cram --algo AlignmentStat HGDP/HGDP00823/QCmetrics/HGDP00823.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	375305410	375305410	1.000000	0	374985756	0.999148	55959073728	349441839	52343843648	50551148155	0.000000	0.004973	0.004227	0.000219	151.000000	372461211	0.993268	0	0.496715	0.022274	0.000238	
SECOND_OF_PAIR	375305410	375305410	1.000000	0	372483433	0.992481	55238933828	346955782	51678965608	48379351942	0.000000	0.008357	0.007635	0.000211	151.000000	372461211	0.999940	0	0.497196	0.022859	0.000227	
PAIR	750610820	750610820	1.000000	0	747469189	0.995815	111198007556	696397621	104022809256	98930500097	0.000000	0.006654	0.005920	0.000215	151.000000	744922422	0.996593	0	0.496954	0.022566	0.000232