#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00828/HGDP00828.cram --algo AlignmentStat HGDP/HGDP00828/QCmetrics/HGDP00828.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	477552066	477552066	1.000000	0	477260359	0.999389	71237897656	445190766	66792165318	65309661052	0.000000	0.005424	0.004671	0.000226	151.000000	475313490	0.995921	0	0.499934	0.020744	0.000001	
SECOND_OF_PAIR	477552066	477552066	1.000000	0	475346607	0.995382	69558243110	442341515	65370270452	61173090983	0.000000	0.010999	0.010204	0.000214	151.000000	475313490	0.999930	0	0.499610	0.022304	0.000359	
PAIR	955104132	955104132	1.000000	0	952606966	0.997385	140796140766	887532281	132162435770	126482752035	0.000000	0.008178	0.007408	0.000220	151.000000	950626980	0.997922	0	0.499772	0.021522	0.000180