#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00837/HGDP00837.cram --algo AlignmentStat HGDP/HGDP00837/QCmetrics/HGDP00837.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	393914531	393914531	1.000000	0	393735684	0.999546	58882940297	368528020	55308868246	53615514009	0.000000	0.004249	0.003596	0.000220	151.000000	393293878	0.998878	0	0.499428	0.018258	0.000060	
SECOND_OF_PAIR	393914531	393914531	1.000000	0	393312351	0.998471	58599558466	367895794	55038845060	52683021708	0.000000	0.005520	0.004866	0.000221	151.000000	393293878	0.999953	0	0.499492	0.018476	0.000058	
PAIR	787829062	787829062	1.000000	0	787048035	0.999009	117482498763	736423814	110347713306	106298535717	0.000000	0.004883	0.004229	0.000221	151.000000	786587756	0.999415	0	0.499460	0.018367	0.000059