#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00838/HGDP00838.cram --algo AlignmentStat HGDP/HGDP00838/QCmetrics/HGDP00838.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	472609207	472609207	1.000000	0	472345450	0.999442	70651726752	443687107	66652080104	65261683904	0.000000	0.004515	0.003879	0.000222	151.000000	470393365	0.995867	0	0.500031	0.019788	0.000002	
SECOND_OF_PAIR	472609207	472609207	1.000000	0	470425419	0.995379	69243217319	440931648	65397589445	61735621361	0.000000	0.009629	0.008965	0.000215	151.000000	470393365	0.999932	0	0.499456	0.020848	0.000394	
PAIR	945218414	945218414	1.000000	0	942770869	0.997411	139894944071	884618755	132049669549	126997305265	0.000000	0.007046	0.006397	0.000219	151.000000	940786730	0.997895	0	0.499744	0.020317	0.000198