#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00843/HGDP00843.cram --algo AlignmentStat HGDP/HGDP00843/QCmetrics/HGDP00843.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	403361889	403361889	1.000000	0	403191807	0.999578	60328522138	378487234	56820559720	55210239102	0.000000	0.004149	0.003534	0.000219	151.000000	402911764	0.999305	0	0.499604	0.017616	0.000078	
SECOND_OF_PAIR	403361889	403361889	1.000000	0	402932293	0.998935	60038389832	377981528	56539901772	54227027704	0.000000	0.005485	0.004868	0.000222	151.000000	402911764	0.999949	0	0.499465	0.017985	0.000075	
PAIR	806723778	806723778	1.000000	0	806124100	0.999257	120366911970	756468762	113360461492	109437266806	0.000000	0.004815	0.004199	0.000221	151.000000	805823528	0.999627	0	0.499535	0.017801	0.000076