#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00849/HGDP00849.cram --algo AlignmentStat HGDP/HGDP00849/QCmetrics/HGDP00849.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	410389092	410389092	1.000000	0	410102201	0.999301	61350324034	383747635	57664963985	56371780476	0.000000	0.004750	0.004080	0.000216	151.000000	407938045	0.994723	0	0.500043	0.018969	0.000002	
SECOND_OF_PAIR	410389092	410389092	1.000000	0	407965083	0.994093	59998646700	380831984	56485212891	53289798749	0.000000	0.009932	0.009225	0.000208	151.000000	407938045	0.999934	0	0.499490	0.020130	0.000540	
PAIR	820778184	820778184	1.000000	0	818067284	0.996697	121348970734	764579619	114150176876	109661579225	0.000000	0.007312	0.006625	0.000212	151.000000	815876090	0.997321	0	0.499767	0.019548	0.000271