#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00856/HGDP00856.cram --algo AlignmentStat HGDP/HGDP00856/QCmetrics/HGDP00856.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	359386436	359386436	1.000000	0	359210790	0.999511	53538493580	335475814	50211300830	48307928680	0.000000	0.005192	0.004444	0.000224	151.000000	357455796	0.995114	0	0.498913	0.020952	0.000095	
SECOND_OF_PAIR	359386436	359386436	1.000000	0	357478578	0.994691	52571868227	333507615	49306526584	46017124825	0.000000	0.009672	0.008960	0.000220	151.000000	357455796	0.999936	0	0.499007	0.021352	0.000090	
PAIR	718772872	718772872	1.000000	0	716689368	0.997101	106110361807	668983429	99517827414	94325053505	0.000000	0.007412	0.006682	0.000222	151.000000	714911592	0.997519	0	0.498960	0.021152	0.000093