#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00859/HGDP00859.cram --algo AlignmentStat HGDP/HGDP00859/QCmetrics/HGDP00859.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	494968248	494968248	1.000000	0	494718108	0.999495	73909661845	462808058	69506278177	67787857137	0.000000	0.005073	0.004346	0.000225	151.000000	492612124	0.995743	0	0.500052	0.021198	0.000001	
SECOND_OF_PAIR	494968248	494968248	1.000000	0	492641025	0.995298	72238636143	459741876	68061500641	63663350698	0.000000	0.010800	0.010065	0.000214	151.000000	492612124	0.999941	0	0.499385	0.022291	0.000346	
PAIR	989936496	989936496	1.000000	0	987359133	0.997396	146148297988	922549934	137567778818	131451207835	0.000000	0.007904	0.007176	0.000220	151.000000	985224248	0.997838	0	0.499719	0.021743	0.000174