#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00860/HGDP00860.cram --algo AlignmentStat HGDP/HGDP00860/QCmetrics/HGDP00860.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	471134804	471134804	1.000000	0	470676557	0.999027	70375848391	442240071	66419861086	64874402734	0.000000	0.004707	0.004075	0.000216	151.000000	468636588	0.995666	0	0.500027	0.019032	0.000002	
SECOND_OF_PAIR	471134804	471134804	1.000000	0	468673354	0.994775	68830567558	439311265	65069697546	61096604140	0.000000	0.010214	0.009555	0.000206	151.000000	468636588	0.999922	0	0.499441	0.020221	0.000805	
PAIR	942269608	942269608	1.000000	0	939349911	0.996901	139206415949	881551336	131489558632	125971006874	0.000000	0.007430	0.006787	0.000211	151.000000	937273176	0.997789	0	0.499734	0.019625	0.000404