#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i HGDP/HGDP00860/HGDP00860.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00860/QCmetrics/HGDP00860.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 39.286 12.106 39 5 0 0.11133 0.0019934 0.038823 0.0046202 0.01607 0.17284 0.99858 0.99607 0.99346 0.99018 0.98407 0.96514 0.89527 0.46192 0.086726 0.013666 0.0073368 0.0055045 0.0043723 0.0036185 0.99755 26 coverage high_quality_coverage_count 0 3896657 1 2196031 2 1707844 3 1540330 4 1462851 5 1421858 6 1412277 7 1407046 8 1437568 9 1476196 10 1538469 11 1638245 12 1762954 13 1928718 14 2144711 15 2409096 16 2760236 17 3209844 18 3810733 19 4622491 20 5762978 21 7354150 22 9574250 23 12621464 24 16704618 25 22012875 26 28715766 27 36927776 28 46628909 29 57713305 30 69949937 31 82940734 32 96180420 33 109064060 34 120974371 35 131310836 36 139495043 37 145144134 38 147914143 39 147839546 40 144869540 41 139363549 42 131544654 43 121902932 44 111053945 45 99450501 46 87610297 47 75939159 48 64813624 49 54483199 50 45146137 51 36927103 52 29780403 53 23747643 54 18723499 55 14620800 56 11320659 57 8711681 58 6678497 59 5110851 60 3925745 61 3024251 62 2359447 63 1868526 64 1506542 65 1240859 66 1048066 67 904111 68 797063 69 717413 70 655343 71 606212 72 566745 73 533378 74 503221 75 478651 76 453917 77 432651 78 412176 79 392748 80 375469 81 358573 82 343586 83 329443 84 315222 85 301683 86 289786 87 276527 88 265856 89 254991 90 245033 91 235851 92 226047 93 217368 94 209080 95 200776 96 193848 97 186714 98 181379 99 175313 100 170238 101 165398 102 160561 103 156155 104 152326 105 147494 106 144889 107 140017 108 136825 109 134732 110 131120 111 127673 112 124502 113 120872 114 118478 115 115767 116 112868 117 109915 118 107150 119 104881 120 101813 121 99048 122 96498 123 93464 124 91524 125 89167 126 86824 127 84658 128 82202 129 79705 130 77852 131 76444 132 74559 133 72346 134 70846 135 68694 136 68426 137 66501 138 65003 139 63151 140 61904 141 60582 142 60211 143 58565 144 57190 145 56071 146 55310 147 54016 148 53382 149 52395 150 51212 151 50466 152 49114 153 49046 154 47821 155 46853 156 46205 157 45147 158 44365 159 43958 160 43376 161 42675 162 42119 163 41317 164 40528 165 40161 166 39165 167 38651 168 37795 169 37228 170 37117 171 36447 172 35890 173 35077 174 34854 175 34368 176 33794 177 33507 178 33001 179 31984 180 31939 181 31886 182 31213 183 30803 184 30116 185 29719 186 29232 187 29061 188 28553 189 28412 190 27512 191 27440 192 27175 193 26683 194 26184 195 26100 196 25512 197 25397 198 24907 199 24709 200 24187 201 24102 202 23697 203 23517 204 23195 205 22593 206 22220 207 22426 208 21782 209 21340 210 21167 211 20982 212 20425 213 20470 214 20178 215 19818 216 19714 217 19373 218 19345 219 18986 220 18953 221 18716 222 18370 223 18124 224 17876 225 17685 226 17429 227 17140 228 17112 229 16866 230 16545 231 16349 232 15957 233 16212 234 15846 235 15817 236 15565 237 15321 238 15104 239 14876 240 14690 241 14344 242 14376 243 14323 244 13915 245 13649 246 13546 247 13348 248 13030 249 12855 250 2394169