#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00862/HGDP00862.cram --algo AlignmentStat HGDP/HGDP00862/QCmetrics/HGDP00862.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	456052297	456052297	1.000000	0	455558067	0.998916	68111506765	427629502	64232522572	62885832769	0.000000	0.004581	0.003904	0.000223	151.000000	453477095	0.995432	0	0.500059	0.020453	0.000003	
SECOND_OF_PAIR	456052297	456052297	1.000000	0	453516565	0.994440	66568730543	424719330	62876810948	59127915371	0.000000	0.010173	0.009468	0.000215	151.000000	453477095	0.999913	0	0.499436	0.021715	0.000888	
PAIR	912104594	912104594	1.000000	0	909074632	0.996678	134680237308	852348832	127109333520	122013748140	0.000000	0.007345	0.006656	0.000219	151.000000	906954190	0.997667	0	0.499748	0.021083	0.000446