#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00863/HGDP00863.cram --algo AlignmentStat HGDP/HGDP00863/QCmetrics/HGDP00863.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	448956101	448956101	1.000000	0	448714055	0.999461	67132040498	421799737	63372390534	61943696983	0.000000	0.004701	0.004112	0.000211	151.000000	446252537	0.994514	0	0.499983	0.018396	0.000001	
SECOND_OF_PAIR	448956101	448956101	1.000000	0	446280649	0.994041	65536507618	418419608	61968357284	58258509490	0.000000	0.010308	0.009674	0.000204	151.000000	446252537	0.999937	0	0.499570	0.019765	0.000374	
PAIR	897912202	897912202	1.000000	0	894994704	0.996751	132668548116	840219345	125340747818	120202206473	0.000000	0.007471	0.006862	0.000207	151.000000	892505074	0.997218	0	0.499777	0.019079	0.000188