#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00864/HGDP00864.cram --algo AlignmentStat HGDP/HGDP00864/QCmetrics/HGDP00864.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	397400844	397400844	1.000000	0	397153182	0.999377	59363149260	372681427	55977226438	54573179377	0.000000	0.004935	0.004275	0.000218	151.000000	395427623	0.995655	0	0.500052	0.020351	0.000001	
SECOND_OF_PAIR	397400844	397400844	1.000000	0	395453126	0.995099	57957806736	370127533	54741167685	51143416654	0.000000	0.010685	0.010015	0.000209	151.000000	395427623	0.999936	0	0.499447	0.021754	0.000457	
PAIR	794801688	794801688	1.000000	0	792606308	0.997238	117320955996	742808960	110718394123	105716596031	0.000000	0.007776	0.007113	0.000213	151.000000	790855246	0.997791	0	0.499750	0.021051	0.000229