#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00865/HGDP00865.cram --algo AlignmentStat HGDP/HGDP00865/QCmetrics/HGDP00865.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	448216067	448216067	1.000000	0	447958134	0.999425	66987633120	421192848	63261858997	61737788115	0.000000	0.004901	0.004273	0.000216	151.000000	445972859	0.995568	0	0.500012	0.018553	0.000001	
SECOND_OF_PAIR	448216067	448216067	1.000000	0	445999323	0.995054	65408744649	418290348	61875936666	57737215055	0.000000	0.010947	0.010296	0.000206	151.000000	445972859	0.999941	0	0.499510	0.019782	0.000418	
PAIR	896432134	896432134	1.000000	0	893957457	0.997239	132396377769	839483196	125137795663	119475003170	0.000000	0.007888	0.007251	0.000211	151.000000	891945718	0.997750	0	0.499762	0.019166	0.000210