#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00869/HGDP00869.cram --algo AlignmentStat HGDP/HGDP00869/QCmetrics/HGDP00869.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	445040266	445040266	1.000000	0	444753583	0.999356	66472395268	417042444	62628871145	61073769417	0.000000	0.005028	0.004354	0.000219	151.000000	442531191	0.995003	0	0.500087	0.019799	0.000001	
SECOND_OF_PAIR	445040266	445040266	1.000000	0	442558334	0.994423	64819060025	413878485	61174823003	56947452293	0.000000	0.011409	0.010723	0.000209	151.000000	442531191	0.999939	0	0.499365	0.021138	0.000478	
PAIR	890080532	890080532	1.000000	0	887311917	0.996889	131291455293	830920929	123803694148	118021221710	0.000000	0.008178	0.007501	0.000214	151.000000	885062382	0.997465	0	0.499727	0.020467	0.000240