#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00870/HGDP00870.cram --algo AlignmentStat HGDP/HGDP00870/QCmetrics/HGDP00870.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	457140010	457140010	1.000000	0	456406054	0.998394	68188508915	427289164	64166775349	62648017894	0.000000	0.004861	0.004164	0.000227	151.000000	454512719	0.995852	0	0.500058	0.021026	0.000003	
SECOND_OF_PAIR	457140010	457140010	1.000000	0	454557020	0.994350	66737045861	424580644	62911117949	59160846229	0.000000	0.010115	0.009400	0.000216	151.000000	454512719	0.999903	0	0.499385	0.022127	0.001407	
PAIR	914280020	914280020	1.000000	0	910963074	0.996372	134925554776	851869808	127077893298	121808864123	0.000000	0.007460	0.006756	0.000221	151.000000	909025438	0.997873	0	0.499722	0.021576	0.000705