#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00871/HGDP00871.cram --algo AlignmentStat HGDP/HGDP00871/QCmetrics/HGDP00871.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	425352733	425352733	1.000000	0	424973817	0.999109	63534136593	398187114	59802912795	58442292721	0.000000	0.004726	0.004032	0.000224	151.000000	423442401	0.996396	0	0.500016	0.021376	0.000003	
SECOND_OF_PAIR	425352733	425352733	1.000000	0	423476571	0.995589	62233815364	395867958	58664442739	55234377488	0.000000	0.009673	0.008949	0.000215	151.000000	423442401	0.999919	0	0.499480	0.022807	0.000726	
PAIR	850705466	850705466	1.000000	0	848450388	0.997349	125767951957	794055072	118467355534	113676670209	0.000000	0.007174	0.006466	0.000219	151.000000	846884802	0.998155	0	0.499748	0.022090	0.000365