#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00872/HGDP00872.cram --algo AlignmentStat HGDP/HGDP00872/QCmetrics/HGDP00872.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	458268817	458268817	1.000000	0	458011160	0.999438	68535467510	430644670	64691880366	63333118398	0.000000	0.004509	0.003896	0.000216	151.000000	455487385	0.994490	0	0.500024	0.018252	0.000002	
SECOND_OF_PAIR	458268817	458268817	1.000000	0	455516903	0.993995	66870899800	427272421	63197393184	59126880288	0.000000	0.010778	0.010129	0.000209	151.000000	455487385	0.999935	0	0.499467	0.019319	0.000400	
PAIR	916537634	916537634	1.000000	0	913528063	0.996716	135406367310	857917091	127889273550	122459998686	0.000000	0.007604	0.006976	0.000213	151.000000	910974770	0.997205	0	0.499747	0.018784	0.000201