#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00873/HGDP00873.cram --algo AlignmentStat HGDP/HGDP00873/QCmetrics/HGDP00873.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	499282293	499282293	1.000000	0	499094749	0.999624	74598665392	467899891	70294494283	68657627131	0.000000	0.004928	0.004223	0.000221	151.000000	495810128	0.993419	0	0.499991	0.021047	0.000001	
SECOND_OF_PAIR	499282293	499282293	1.000000	0	495839613	0.993105	72603930765	463538006	68530773607	63990135502	0.000000	0.011287	0.010569	0.000211	151.000000	495810128	0.999941	0	0.499532	0.022253	0.000215	
PAIR	998564586	998564586	1.000000	0	994934362	0.996365	147202596157	931437897	138825267890	132647762633	0.000000	0.008064	0.007355	0.000216	151.000000	991620256	0.996669	0	0.499762	0.021648	0.000108