#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00875/HGDP00875.cram --algo AlignmentStat HGDP/HGDP00875/QCmetrics/HGDP00875.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	376506711	376506711	1.000000	0	376138939	0.999023	56228338589	352551430	52957810675	51649254180	0.000000	0.004877	0.004236	0.000218	151.000000	374659913	0.996068	0	0.499984	0.019295	0.000004	
SECOND_OF_PAIR	376506711	376506711	1.000000	0	374686358	0.995165	54954584189	350333857	51851950950	48514167727	0.000000	0.010469	0.009809	0.000209	151.000000	374659913	0.999929	0	0.499511	0.020575	0.000812	
PAIR	753013422	753013422	1.000000	0	750825297	0.997094	111182922778	702885287	104809761625	100163421907	0.000000	0.007641	0.006993	0.000214	151.000000	749319826	0.997995	0	0.499748	0.019934	0.000408