#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00876/HGDP00876.cram --algo AlignmentStat HGDP/HGDP00876/QCmetrics/HGDP00876.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	434183206	434183206	1.000000	0	433899583	0.999347	64843902432	406708635	61080036862	59579923000	0.000000	0.004999	0.004322	0.000220	151.000000	431895367	0.995381	0	0.499911	0.020247	0.000002	
SECOND_OF_PAIR	434183206	434183206	1.000000	0	431922978	0.994794	63332380615	403847740	59757557417	55834331928	0.000000	0.010822	0.010130	0.000210	151.000000	431895367	0.999936	0	0.499527	0.021528	0.000487	
PAIR	868366412	868366412	1.000000	0	865822561	0.997071	128176283047	810556375	120837594279	115414254928	0.000000	0.007876	0.007194	0.000215	151.000000	863790734	0.997653	0	0.499719	0.020886	0.000245