#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00880/HGDP00880.cram --algo AlignmentStat HGDP/HGDP00880/QCmetrics/HGDP00880.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	419655869	419655869	1.000000	0	419283991	0.999114	62610624831	392572940	58927576644	57399470663	0.000000	0.005341	0.004620	0.000218	151.000000	416307466	0.992901	0	0.499844	0.020777	0.000003	
SECOND_OF_PAIR	419655869	419655869	1.000000	0	416338926	0.992096	60446930978	388538393	56981974466	51932419810	1.000000	0.014128	0.013429	0.000206	151.000000	416307466	0.999924	0	0.499535	0.022152	0.000632	
PAIR	839311738	839311738	1.000000	0	835622917	0.995605	123057555809	781111333	115909551110	109331890473	0.000000	0.009657	0.008950	0.000212	151.000000	832614932	0.996400	0	0.499690	0.021462	0.000317