#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00882/HGDP00882.cram --algo AlignmentStat HGDP/HGDP00882/QCmetrics/HGDP00882.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	385734443	385734443	1.000000	0	380046472	0.985254	56645700265	354837003	53191107065	51661578844	0.000000	0.005702	0.004951	0.000221	151.000000	378381316	0.995619	0	0.500014	0.020739	0.000021	
SECOND_OF_PAIR	385734443	385734443	1.000000	0	378497420	0.981238	55173041374	352419766	51912786563	47819280441	0.000000	0.012614	0.011874	0.000208	151.000000	378381316	0.999693	0	0.499441	0.022022	0.013988	
PAIR	771468886	771468886	1.000000	0	758543892	0.983246	111818741639	707256769	105103893628	99480859285	0.000000	0.009112	0.008370	0.000215	151.000000	756762632	0.997652	0	0.499728	0.021379	0.007005