#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00883/HGDP00883.cram --algo AlignmentStat HGDP/HGDP00883/QCmetrics/HGDP00883.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	400267004	400267004	1.000000	0	399434219	0.997919	59597242321	373434838	56008507051	54478585956	0.000000	0.005411	0.004689	0.000218	151.000000	397590039	0.995383	0	0.499874	0.020026	0.000007	
SECOND_OF_PAIR	400267004	400267004	1.000000	0	397627424	0.993405	57957690262	370747185	54567141031	50205608347	0.000000	0.012582	0.011869	0.000206	151.000000	397590039	0.999906	0	0.499589	0.021333	0.001762	
PAIR	800534008	800534008	1.000000	0	797061643	0.995662	117554932583	744182023	110575648082	104684194303	0.000000	0.008946	0.008232	0.000212	151.000000	795180078	0.997639	0	0.499731	0.020678	0.000885