#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00889/HGDP00889.cram --algo AlignmentStat HGDP/HGDP00889/QCmetrics/HGDP00889.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	425437523	425437523	1.000000	0	424983588	0.998933	63471877939	398360933	59803662234	58299793125	0.000000	0.005149	0.004490	0.000215	151.000000	423035937	0.995417	0	0.499831	0.019598	0.000003	
SECOND_OF_PAIR	425437523	425437523	1.000000	0	423067119	0.994428	61691210606	395432663	58249123138	53637687629	0.000000	0.012472	0.011815	0.000202	151.000000	423035937	0.999926	0	0.499609	0.021109	0.000823	
PAIR	850875046	850875046	1.000000	0	848050707	0.996681	125163088545	793793596	118052785372	111937480754	0.000000	0.008758	0.008104	0.000209	151.000000	846071874	0.997667	0	0.499720	0.020352	0.000413