#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00890/HGDP00890.cram --algo AlignmentStat HGDP/HGDP00890/QCmetrics/HGDP00890.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	450481141	450481141	1.000000	0	449122301	0.996984	67090181560	420832440	63152304043	61400170173	0.000000	0.005429	0.004744	0.000214	151.000000	446581322	0.994342	0	0.499929	0.018812	0.000008	
SECOND_OF_PAIR	450481141	450481141	1.000000	0	446629898	0.991451	65071374595	417205347	61352455047	56067539245	1.000000	0.013643	0.012965	0.000201	151.000000	446581322	0.999891	0	0.499530	0.020194	0.002717	
PAIR	900962282	900962282	1.000000	0	895752199	0.994217	132161556155	838037787	124504759090	117467709418	0.000000	0.009473	0.008795	0.000208	151.000000	893162644	0.997109	0	0.499730	0.019501	0.001362