#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00892/HGDP00892.cram --algo AlignmentStat HGDP/HGDP00892/QCmetrics/HGDP00892.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	434772674	434772674	1.000000	0	433683392	0.997495	64719535766	405025260	60743817084	59092643643	0.000000	0.005315	0.004632	0.000214	151.000000	431486012	0.994933	0	0.499968	0.019319	0.000008	
SECOND_OF_PAIR	434772674	434772674	1.000000	0	431532954	0.992548	62801256146	401882115	59049489718	54168417658	1.000000	0.012981	0.012298	0.000203	151.000000	431486012	0.999891	0	0.499508	0.020867	0.002151	
PAIR	869545348	869545348	1.000000	0	865216346	0.995022	127520791912	806907375	119793306802	113261061301	0.000000	0.009090	0.008411	0.000209	151.000000	862972024	0.997406	0	0.499738	0.020091	0.001079