#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00893/HGDP00893.cram --algo AlignmentStat HGDP/HGDP00893/QCmetrics/HGDP00893.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	447414458	447414458	1.000000	0	446992702	0.999057	66630146034	415602511	62309259206	60501103512	0.000000	0.005668	0.004912	0.000219	151.000000	444879197	0.995272	0	0.499973	0.021182	0.000003	
SECOND_OF_PAIR	447414458	447414458	1.000000	0	444922641	0.994431	64686247148	412547642	60622627251	55543860914	1.000000	0.013423	0.012676	0.000208	151.000000	444879197	0.999902	0	0.499528	0.022760	0.000602	
PAIR	894828916	894828916	1.000000	0	891915343	0.996744	131316393182	828150153	122931886457	116044964426	0.000000	0.009488	0.008740	0.000214	151.000000	889758394	0.997582	0	0.499751	0.021969	0.000302