#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00894/HGDP00894.cram --algo AlignmentStat HGDP/HGDP00894/QCmetrics/HGDP00894.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	429605159	429605159	1.000000	0	429198216	0.999053	64072670201	401332125	60265295026	58836139689	0.000000	0.005105	0.004319	0.000222	151.000000	426600900	0.993948	0	0.499828	0.021785	0.000004	
SECOND_OF_PAIR	429605159	429605159	1.000000	0	426632778	0.993081	61971346269	397617891	58411689158	53274355049	1.000000	0.014148	0.013409	0.000208	151.000000	426600900	0.999925	0	0.499645	0.023493	0.000663	
PAIR	859210318	859210318	1.000000	0	855830994	0.996067	126044016470	798950016	118676984184	112110494738	0.000000	0.009551	0.008793	0.000215	151.000000	853201800	0.996928	0	0.499737	0.022637	0.000333