#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00895/HGDP00895.cram --algo AlignmentStat HGDP/HGDP00895/QCmetrics/HGDP00895.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	384221012	384221012	1.000000	0	383857645	0.999054	57329845632	358436030	53822390395	52457433078	0.000000	0.005192	0.004439	0.000217	151.000000	381646479	0.994240	0	0.499887	0.021018	0.000002	
SECOND_OF_PAIR	384221012	384221012	1.000000	0	381673865	0.993371	55455611554	355255674	52166111608	47619541744	1.000000	0.013919	0.013195	0.000205	151.000000	381646479	0.999928	0	0.499525	0.022637	0.000706	
PAIR	768442024	768442024	1.000000	0	765531510	0.996212	112785457186	713691704	105988502003	100076974822	0.000000	0.009483	0.008748	0.000211	151.000000	763292958	0.997076	0	0.499707	0.021825	0.000354