#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00897/HGDP00897.cram --algo AlignmentStat HGDP/HGDP00897/QCmetrics/HGDP00897.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	443813316	443813316	1.000000	0	443319432	0.998887	66213975411	413875864	62127952799	60538953339	0.000000	0.005280	0.004555	0.000216	151.000000	441097116	0.994987	0	0.499917	0.021081	0.000003	
SECOND_OF_PAIR	443813316	443813316	1.000000	0	441130718	0.993956	64293956093	410596335	60445032415	55512034610	1.000000	0.012912	0.012183	0.000204	151.000000	441097116	0.999924	0	0.499493	0.022722	0.000853	
PAIR	887626632	887626632	1.000000	0	884450150	0.996421	130507931504	824472199	122572985214	116050987949	0.000000	0.009039	0.008316	0.000210	151.000000	882194232	0.997449	0	0.499706	0.021899	0.000428