#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00898/HGDP00898.cram --algo AlignmentStat HGDP/HGDP00898/QCmetrics/HGDP00898.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	455407127	455407127	1.000000	0	452769578	0.994208	67563141669	424640356	63721173127	61950026547	0.000000	0.005447	0.004733	0.000222	151.000000	450530081	0.995054	0	0.499928	0.020790	0.000017	
SECOND_OF_PAIR	455407127	455407127	1.000000	0	450601164	0.989447	65664279013	421392014	62047294474	56944607693	1.000000	0.012994	0.012316	0.000208	151.000000	450530081	0.999842	0	0.499526	0.022058	0.005382	
PAIR	910814254	910814254	1.000000	0	903370742	0.991828	133227420682	846032370	125768467601	118894634240	0.000000	0.009167	0.008474	0.000215	151.000000	901060162	0.997442	0	0.499728	0.021423	0.002700