#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00902/HGDP00902.cram --algo AlignmentStat HGDP/HGDP00902/QCmetrics/HGDP00902.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	411631501	411631501	1.000000	0	411265993	0.999112	61424677203	385711152	57932159777	56573309297	0.000000	0.004950	0.004262	0.000219	151.000000	409315326	0.995257	0	0.500025	0.020323	0.000003	
SECOND_OF_PAIR	411631501	411631501	1.000000	0	409342504	0.994439	59757571875	382810830	56466604127	51940176884	0.000000	0.012857	0.012198	0.000206	151.000000	409315326	0.999934	0	0.499497	0.021655	0.000666	
PAIR	823263002	823263002	1.000000	0	820608497	0.996776	121182249078	768521982	114398763904	108513486181	0.000000	0.008849	0.008179	0.000213	151.000000	818630652	0.997590	0	0.499762	0.020987	0.000334