#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i HGDP/HGDP00902/HGDP00902.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00902/QCmetrics/HGDP00902.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	2.2859	17.668	0	0	0	0.04492	0.0061766	0.10394	0.040158	0.43685	0.63204	0.16524	0.044897	0.028724	0.022055	0.018414	0.016081	0.01439	0.012054	0.010626	0.0096459	0.0088481	0.0081988	0.0076205	0.0071059	0.10117	0	

coverage	high_quality_coverage_count	
0	19730570
1	2038423
2	424353
3	225176
4	156625
5	116624
6	88935
7	70489
8	57997
9	48232
10	41623
11	35725
12	30406
13	26213
14	23670
15	21500
16	18723
17	16687
18	15166
19	13967
20	12789
21	11951
22	10869
23	10087
24	9465
25	8929
26	8447
27	7890
28	7593
29	7101
30	6812
31	6468
32	6115
33	5877
34	5632
35	5389
36	4947
37	4750
38	4694
39	4527
40	4129
41	4014
42	3644
43	3474
44	3377
45	3285
46	3045
47	2899
48	2959
49	2936
50	2696
51	2501
52	2489
53	2375
54	2358
55	2262
56	2189
57	2146
58	2098
59	2048
60	2034
61	1904
62	1983
63	1921
64	1968
65	1873
66	1784
67	1810
68	1801
69	1780
70	1659
71	1644
72	1563
73	1511
74	1541
75	1498
76	1525
77	1509
78	1458
79	1440
80	1492
81	1411
82	1404
83	1404
84	1406
85	1316
86	1304
87	1354
88	1303
89	1275
90	1211
91	1242
92	1227
93	1243
94	1249
95	1253
96	1178
97	1189
98	1182
99	1188
100	1190
101	1147
102	1091
103	1205
104	1155
105	1178
106	1125
107	1177
108	1165
109	1093
110	1045
111	1017
112	1062
113	1065
114	1062
115	1047
116	1029
117	1006
118	1061
119	1063
120	1011
121	1017
122	1000
123	1007
124	1019
125	1013
126	1047
127	1052
128	987
129	1113
130	1038
131	1041
132	1127
133	1042
134	1092
135	1108
136	1122
137	1059
138	1066
139	1070
140	1023
141	1018
142	1020
143	1036
144	976
145	1000
146	1066
147	1044
148	993
149	996
150	975
151	965
152	924
153	892
154	862
155	833
156	804
157	796
158	784
159	791
160	764
161	811
162	761
163	792
164	684
165	670
166	654
167	654
168	635
169	655
170	634
171	562
172	647
173	563
174	555
175	613
176	537
177	589
178	561
179	528
180	550
181	508
182	555
183	506
184	486
185	469
186	461
187	451
188	442
189	429
190	446
191	449
192	440
193	379
194	432
195	385
196	370
197	345
198	364
199	340
200	343
201	369
202	329
203	342
204	365
205	379
206	349
207	354
208	361
209	350
210	344
211	384
212	375
213	339
214	331
215	329
216	326
217	332
218	291
219	322
220	329
221	313
222	300
223	307
224	270
225	281
226	284
227	299
228	276
229	274
230	258
231	268
232	246
233	249
234	226
235	264
236	248
237	271
238	232
239	224
240	235
241	226
242	244
243	220
244	237
245	243
246	227
247	257
248	201
249	224
250	69823