#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00906/HGDP00906.cram --algo AlignmentStat HGDP/HGDP00906/QCmetrics/HGDP00906.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	453423431	453423431	1.000000	0	453181256	0.999466	67739588200	422534478	63451982759	61961101650	0.000000	0.005056	0.004285	0.000247	151.000000	451427241	0.996130	0	0.500024	0.021250	0.000001	
SECOND_OF_PAIR	453423431	453423431	1.000000	0	451456578	0.995662	66385265509	419969146	62275927175	58664465777	0.000000	0.010097	0.009296	0.000237	151.000000	451427241	0.999935	0	0.499415	0.022426	0.000384	
PAIR	906846862	906846862	1.000000	0	904637834	0.997564	134124853709	842503624	125727909934	120625567427	0.000000	0.007551	0.006767	0.000242	151.000000	902854482	0.998029	0	0.499720	0.021837	0.000192