#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i HGDP/HGDP00906/HGDP00906.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00906/QCmetrics/HGDP00906.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 38.289 12.269 38 5 0 0.11251 0.0017645 0.03749 0.0069425 0.018426 0.17713 0.99865 0.99594 0.9932 0.98974 0.98316 0.96123 0.87767 0.40204 0.063254 0.012277 0.0078421 0.0060247 0.0047853 0.0039384 0.99755 26 coverage high_quality_coverage_count 0 3718346 1 2367206 2 1868923 3 1659067 4 1544731 5 1492039 6 1480133 7 1484737 8 1513119 9 1561225 10 1629308 11 1728939 12 1860186 13 2035487 14 2260197 15 2554199 16 2938587 17 3430764 18 4105669 19 5050266 20 6396449 21 8321825 22 11026465 23 14752998 24 19760050 25 26259408 26 34417762 27 44305575 28 55848470 29 68787647 30 82729575 31 97121721 32 111295989 33 124495327 34 135980480 35 145113625 36 151355485 37 154372922 38 154034842 39 150506988 40 144031696 41 135089294 42 124240106 43 112113244 44 99287114 45 86436395 46 73953129 47 62240060 48 51538073 49 42049479 50 33806868 51 26818147 52 21013915 53 16292092 54 12509248 55 9544229 56 7244745 57 5491141 58 4174557 59 3188748 60 2469391 61 1940627 62 1557355 63 1281636 64 1083121 65 938038 66 831316 67 751882 68 690788 69 642336 70 605322 71 573647 72 547013 73 523273 74 503765 75 481581 76 464586 77 447009 78 431794 79 416284 80 402201 81 388642 82 374276 83 359528 84 346136 85 332037 86 318600 87 306952 88 294493 89 282813 90 271940 91 262109 92 251787 93 243023 94 234190 95 226632 96 219699 97 212908 98 205679 99 199269 100 193353 101 187805 102 183046 103 175322 104 170695 105 165701 106 160526 107 155440 108 151507 109 146365 110 142846 111 139549 112 134837 113 130754 114 128421 115 123597 116 121270 117 117803 118 114708 119 112066 120 108651 121 106429 122 103595 123 101416 124 98321 125 96505 126 94183 127 92372 128 89917 129 88019 130 85400 131 83199 132 81687 133 79731 134 78101 135 76477 136 74686 137 73113 138 71501 139 69624 140 67619 141 66319 142 65321 143 64062 144 62783 145 60993 146 60275 147 58277 148 57525 149 56433 150 55672 151 53947 152 53360 153 52013 154 51049 155 49983 156 49307 157 48519 158 47308 159 46731 160 45856 161 44862 162 44097 163 43151 164 42483 165 42071 166 41344 167 40916 168 40004 169 39079 170 39220 171 38542 172 38104 173 37204 174 36868 175 36234 176 35437 177 35171 178 34856 179 34358 180 33772 181 33127 182 32886 183 32637 184 32031 185 31476 186 31386 187 30965 188 29951 189 29705 190 29706 191 29031 192 28954 193 28850 194 28185 195 27639 196 27477 197 27188 198 27318 199 26790 200 26265 201 25869 202 25558 203 24885 204 24673 205 24494 206 24038 207 23690 208 23619 209 23084 210 22820 211 22349 212 22054 213 21754 214 21522 215 21213 216 20981 217 20285 218 20186 219 20011 220 19824 221 19625 222 19556 223 19132 224 18862 225 18575 226 18661 227 18365 228 18012 229 17767 230 17593 231 17267 232 17135 233 17006 234 16686 235 16530 236 16187 237 16008 238 16221 239 15700 240 15756 241 15291 242 15313 243 15026 244 15236 245 15115 246 15038 247 14934 248 14513 249 14365 250 2633081