#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i HGDP/HGDP00906/HGDP00906.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00906/QCmetrics/HGDP00906.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	22.55	25.937	19	3	0	0.070336	0.0018279	0.054383	0.01147	0.33468	0.4727	0.99651	0.99114	0.96708	0.80208	0.42855	0.14966	0.062973	0.039445	0.033005	0.028223	0.024252	0.021139	0.018607	0.016736	0.99253	21	

coverage	high_quality_coverage_count	
0	82567
1	35918
2	28904
3	29654
4	32459
5	43193
6	61333
7	90831
8	143697
9	229608
10	354195
11	529401
12	745128
13	999825
14	1271341
15	1516410
16	1712464
17	1851089
18	1897649
19	1851242
20	1730253
21	1546580
22	1329699
23	1101515
24	884079
25	684814
26	516929
27	379002
28	273889
29	194234
30	139424
31	101367
32	75703
33	57392
34	44923
35	35997
36	30074
37	26733
38	23317
39	21184
40	18909
41	17690
42	16733
43	15826
44	15129
45	14680
46	14202
47	13328
48	12964
49	12749
50	12353
51	11931
52	11562
53	11413
54	11419
55	11302
56	11267
57	10804
58	10694
59	10286
60	10322
61	10051
62	9600
63	9601
64	9510
65	9312
66	9231
67	9073
68	8716
69	8450
70	8307
71	8028
72	7698
73	7651
74	7420
75	7144
76	7051
77	6759
78	6687
79	6837
80	6521
81	6425
82	6257
83	6260
84	5981
85	5987
86	5762
87	5722
88	5546
89	5383
90	5084
91	4926
92	4994
93	4566
94	4462
95	4228
96	4196
97	4035
98	4027
99	3708
100	3536
101	3668
102	3609
103	3494
104	3432
105	3436
106	3217
107	3219
108	3269
109	3129
110	3087
111	3003
112	3025
113	3032
114	2801
115	2784
116	2754
117	2686
118	2675
119	2532
120	2472
121	2368
122	2421
123	2424
124	2345
125	2233
126	2133
127	2123
128	1982
129	2010
130	1933
131	1724
132	1772
133	1744
134	1664
135	1560
136	1477
137	1446
138	1363
139	1333
140	1327
141	1314
142	1329
143	1180
144	1286
145	1218
146	1249
147	1191
148	1130
149	1165
150	1205
151	1122
152	1113
153	1109
154	1122
155	1114
156	1065
157	1030
158	1096
159	1064
160	1073
161	1037
162	1080
163	1042
164	1022
165	977
166	955
167	965
168	946
169	939
170	915
171	919
172	971
173	938
174	915
175	922
176	994
177	958
178	949
179	970
180	963
181	970
182	886
183	888
184	906
185	916
186	916
187	910
188	898
189	896
190	856
191	856
192	944
193	867
194	903
195	802
196	848
197	861
198	878
199	846
200	854
201	824
202	835
203	871
204	804
205	833
206	798
207	859
208	840
209	828
210	846
211	839
212	800
213	820
214	785
215	728
216	766
217	769
218	783
219	783
220	741
221	732
222	729
223	657
224	675
225	685
226	664
227	658
228	629
229	611
230	662
231	627
232	622
233	657
234	620
235	645
236	600
237	576
238	619
239	587
240	569
241	591
242	568
243	583
244	560
245	599
246	580
247	567
248	565
249	571
250	198925