#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00907/HGDP00907.cram --algo AlignmentStat HGDP/HGDP00907/QCmetrics/HGDP00907.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	370347816	370347816	1.000000	0	369873814	0.998720	55241827622	346256107	51886128288	49608950139	0.000000	0.005715	0.005055	0.000230	151.000000	367766129	0.994302	0	0.491809	0.031915	0.000935	
SECOND_OF_PAIR	370347816	370347816	1.000000	0	367796874	0.993112	53752329678	343297182	50420569137	46304498757	0.000000	0.010499	0.009818	0.000231	151.000000	367766129	0.999916	0	0.491811	0.032738	0.000898	
PAIR	740695632	740695632	1.000000	0	737670688	0.995916	108994157300	689553289	102306697425	95913448896	0.000000	0.008074	0.007402	0.000231	151.000000	735532258	0.997101	0	0.491810	0.032325	0.000916