#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i HGDP/HGDP00907/HGDP00907.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00907/QCmetrics/HGDP00907.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 32.241 11.814 32 5 0 0.064477 0.002274 0.05909 0.0088811 0.013423 0.14815 0.99729 0.99282 0.98643 0.97271 0.93401 0.82909 0.62527 0.16831 0.021069 0.0072691 0.0052078 0.0040276 0.0032502 0.00271 0.99511 23 coverage high_quality_coverage_count 0 7435918 1 3539003 2 3034936 3 2879577 4 2847372 5 2920621 6 3101466 7 3384698 8 3810139 9 4343665 10 5056518 11 5998518 12 7203929 13 8742422 14 10699787 15 13194449 16 16338897 17 20301920 18 25224470 19 31280317 20 38530658 21 47011806 22 56683741 23 67346536 24 78734794 25 90508706 26 102158667 27 113194195 28 123047805 29 131176759 30 137304853 31 140973692 32 142077327 33 140554658 34 136570547 35 130348744 36 122237025 37 112657208 38 102067568 39 90936239 40 79731377 41 68774905 42 58403487 43 48862180 44 40271507 45 32730468 46 26245751 47 20766507 48 16255891 49 12566028 50 9628760 51 7334295 52 5556772 53 4200425 54 3189677 55 2436176 56 1887456 57 1490829 58 1203193 59 994229 60 845565 61 736358 62 655824 63 595324 64 549354 65 508711 66 479054 67 453603 68 430524 69 410225 70 391405 71 374911 72 358179 73 344090 74 328734 75 313772 76 302018 77 287905 78 276660 79 265428 80 254637 81 243587 82 233481 83 224557 84 215916 85 207190 86 199657 87 193118 88 185571 89 178514 90 172912 91 166498 92 161230 93 155082 94 150933 95 144966 96 139596 97 135142 98 131234 99 126852 100 123403 101 120130 102 115693 103 112478 104 109564 105 106218 106 103399 107 99922 108 97145 109 94967 110 91231 111 88778 112 86332 113 84082 114 81634 115 78843 116 77717 117 75446 118 74089 119 71444 120 70510 121 68721 122 66699 123 65610 124 63689 125 62154 126 60995 127 59395 128 57875 129 57117 130 55448 131 54768 132 53673 133 53046 134 52004 135 51030 136 50170 137 49361 138 48353 139 47569 140 47103 141 46133 142 45274 143 45106 144 43866 145 43307 146 42712 147 41941 148 41184 149 40453 150 39865 151 39663 152 39317 153 38445 154 38054 155 37212 156 36458 157 35955 158 35642 159 35101 160 34197 161 34066 162 33280 163 32559 164 32317 165 31696 166 31203 167 30497 168 30158 169 29626 170 29259 171 28490 172 28040 173 27607 174 27351 175 27008 176 26298 177 25597 178 25164 179 24866 180 24384 181 24041 182 23694 183 23474 184 23142 185 22639 186 22623 187 22449 188 21980 189 21813 190 21442 191 21013 192 20858 193 20444 194 20059 195 20029 196 19477 197 19198 198 19021 199 19083 200 18363 201 18578 202 18043 203 17691 204 17742 205 17209 206 17080 207 17084 208 16719 209 16571 210 16004 211 15869 212 15762 213 15773 214 15451 215 15330 216 15023 217 14569 218 14821 219 14525 220 14034 221 14122 222 13994 223 14007 224 13744 225 13506 226 13275 227 13013 228 12918 229 12931 230 12732 231 12527 232 12525 233 12085 234 12225 235 12013 236 11989 237 11834 238 11476 239 11475 240 11352 241 11354 242 11230 243 11055 244 10917 245 10738 246 10634 247 10637 248 10522 249 10313 250 1879985