#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i HGDP/HGDP00907/HGDP00907.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00907/QCmetrics/HGDP00907.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 19.843 26.946 16 3 0 0.056412 0.0027954 0.063024 0.0096579 0.27151 0.4034 0.99414 0.98088 0.89319 0.58219 0.22629 0.078432 0.048009 0.037588 0.033359 0.03034 0.027791 0.025508 0.023365 0.021586 0.98332 18 coverage high_quality_coverage_count 0 138441 1 57706 2 62488 3 80730 4 112551 5 168044 6 249284 7 370895 8 536615 9 747843 10 999242 11 1266205 12 1515588 13 1718298 14 1851651 15 1901847 16 1863235 17 1743310 18 1563024 19 1340792 20 1100417 21 870281 22 668651 23 495446 24 359923 25 255854 26 180568 27 126507 28 90927 29 65227 30 48336 31 37573 32 30372 33 25575 34 22571 35 19669 36 17763 37 15994 38 14826 39 13632 40 12231 41 11547 42 11049 43 10239 44 10123 45 9651 46 9235 47 8900 48 8644 49 8348 50 8059 51 7793 52 7653 53 7328 54 7074 55 6939 56 6786 57 6742 58 6510 59 6467 60 6294 61 6192 62 6310 63 6225 64 6065 65 5798 66 6036 67 5760 68 5736 69 5834 70 5575 71 5425 72 5375 73 5505 74 5390 75 5301 76 5362 77 5328 78 5432 79 5269 80 5229 81 5212 82 5188 83 5255 84 5193 85 5228 86 5039 87 4908 88 4772 89 4637 90 4411 91 4380 92 4314 93 4254 94 4150 95 4145 96 4137 97 4047 98 4084 99 4137 100 4009 101 4105 102 4026 103 3999 104 4019 105 3999 106 3892 107 3932 108 3779 109 3815 110 3772 111 3563 112 3661 113 3584 114 3389 115 3315 116 3456 117 3508 118 3465 119 3580 120 3620 121 3592 122 3705 123 3647 124 3714 125 3629 126 3730 127 3756 128 3740 129 3761 130 3796 131 3833 132 3874 133 3815 134 3771 135 3737 136 3776 137 3774 138 3677 139 3644 140 3783 141 3692 142 3819 143 3795 144 3765 145 3754 146 3739 147 3805 148 3806 149 3742 150 3755 151 3696 152 3783 153 3618 154 3530 155 3614 156 3437 157 3454 158 3339 159 3215 160 3284 161 3170 162 3072 163 3111 164 3128 165 2982 166 2913 167 2783 168 2644 169 2653 170 2437 171 2473 172 2363 173 2244 174 2215 175 2103 176 2077 177 1987 178 1963 179 1900 180 1956 181 1766 182 1755 183 1753 184 1710 185 1724 186 1516 187 1517 188 1548 189 1403 190 1423 191 1407 192 1341 193 1331 194 1218 195 1203 196 1210 197 1143 198 1153 199 1137 200 1047 201 1021 202 1036 203 980 204 943 205 938 206 913 207 933 208 931 209 912 210 903 211 863 212 855 213 854 214 835 215 888 216 807 217 854 218 779 219 803 220 768 221 746 222 762 223 680 224 756 225 728 226 694 227 692 228 669 229 637 230 596 231 650 232 630 233 597 234 611 235 610 236 572 237 569 238 545 239 541 240 557 241 554 242 512 243 540 244 529 245 544 246 518 247 552 248 485 249 488 250 170461