#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00908/HGDP00908.cram --algo AlignmentStat HGDP/HGDP00908/QCmetrics/HGDP00908.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	369023107	369023107	1.000000	0	368667950	0.999038	55033313088	344127453	51557331275	49289650641	0.000000	0.005423	0.004698	0.000235	151.000000	367250019	0.996154	0	0.493397	0.029225	0.000653	
SECOND_OF_PAIR	369023107	369023107	1.000000	0	367278599	0.995273	53581376304	342058916	50145994961	46443937790	0.000000	0.009479	0.008745	0.000237	151.000000	367250019	0.999922	0	0.493707	0.030202	0.000626	
PAIR	738046214	738046214	1.000000	0	735946549	0.997155	108614689392	686186369	101703326236	95733588431	0.000000	0.007424	0.006693	0.000236	151.000000	734500038	0.998034	0	0.493552	0.029713	0.000639