#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i HGDP/HGDP00908/HGDP00908.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00908/QCmetrics/HGDP00908.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 32.476 11.633 32 5 0 0.059097 0.0013088 0.055914 0.0061895 0.016068 0.13858 0.99674 0.99222 0.98642 0.97407 0.94114 0.84974 0.6513 0.16196 0.017884 0.0071785 0.0052136 0.0040446 0.0032939 0.0027537 0.99455 23 coverage high_quality_coverage_count 0 8949186 1 3916177 2 3071748 3 2773829 4 2663958 5 2682843 6 2826214 7 3063617 8 3428242 9 3935221 10 4599280 11 5456604 12 6528464 13 7855039 14 9513395 15 11551370 16 14095743 17 17285089 18 21279835 19 26257348 20 32414964 21 39922285 22 48844524 23 59198610 24 70791449 25 83417533 26 96610043 27 109783485 28 122231817 29 133267338 30 142213360 31 148460062 32 151615037 33 151549580 34 148176546 35 141819998 36 132854828 37 121886188 38 109572898 39 96529638 40 83398447 41 70681723 42 58770833 43 48017651 44 38563499 45 30464581 46 23708549 47 18194241 48 13788941 49 10339014 50 7695854 51 5706968 52 4235002 53 3153802 54 2379972 55 1829097 56 1440714 57 1164853 58 973248 59 838792 60 740437 61 666353 62 613565 63 569227 64 532686 65 503353 66 476250 67 453411 68 432299 69 411724 70 393461 71 374583 72 356663 73 342250 74 326509 75 311780 76 296971 77 282653 78 269486 79 258022 80 245688 81 235764 82 226226 83 216244 84 208105 85 199655 86 192424 87 186600 88 179347 89 173088 90 168303 91 163286 92 158937 93 154121 94 150096 95 145966 96 140956 97 137713 98 133934 99 131118 100 127742 101 123574 102 120133 103 116973 104 112988 105 110331 106 106733 107 104234 108 100154 109 98969 110 96244 111 93376 112 90250 113 88347 114 86315 115 83987 116 81546 117 79266 118 76611 119 75374 120 72754 121 70598 122 68375 123 67071 124 65202 125 63848 126 61572 127 60870 128 59409 129 57533 130 56174 131 55276 132 53749 133 52818 134 51241 135 50528 136 48973 137 48154 138 47289 139 46577 140 45447 141 44914 142 44064 143 43317 144 42339 145 42055 146 41513 147 40603 148 40522 149 39664 150 38789 151 38122 152 38029 153 37170 154 36889 155 36121 156 35675 157 34900 158 34177 159 33658 160 33201 161 32477 162 32310 163 32264 164 31615 165 31377 166 30708 167 30039 168 29759 169 29286 170 29147 171 28462 172 28280 173 27812 174 27201 175 26931 176 26482 177 26289 178 25875 179 25709 180 24802 181 24366 182 24170 183 24010 184 23590 185 22679 186 22553 187 22252 188 21922 189 21973 190 21212 191 21036 192 20749 193 20030 194 20576 195 20029 196 19628 197 19250 198 19250 199 19100 200 18720 201 18186 202 18122 203 17717 204 17786 205 17380 206 17026 207 16472 208 16339 209 16282 210 16149 211 15851 212 15678 213 15517 214 15104 215 15201 216 14979 217 14843 218 14814 219 14557 220 14237 221 14412 222 14131 223 13843 224 13776 225 13883 226 13586 227 13446 228 13267 229 13327 230 13102 231 12904 232 12838 233 12648 234 12487 235 12345 236 12206 237 12169 238 11885 239 11885 240 11400 241 11574 242 11414 243 11143 244 10924 245 10957 246 10792 247 10888 248 10710 249 10603 250 1929932