#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i HGDP/HGDP00908/HGDP00908.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00908/QCmetrics/HGDP00908.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 20.842 28.887 16 3 0 0.063715 0.0017921 0.059048 0.0070777 0.31077 0.44241 0.99396 0.98156 0.91155 0.63221 0.26183 0.089284 0.050788 0.03872 0.034089 0.030654 0.02782 0.025646 0.023981 0.022679 0.98437 18 coverage high_quality_coverage_count 0 142703 1 60479 2 61289 3 73134 4 98302 5 137156 6 198848 7 290999 8 424768 9 602903 10 824723 11 1080045 12 1343383 13 1583568 14 1770926 15 1878780 16 1900729 17 1826289 18 1674922 19 1473747 20 1241107 21 1007425 22 789725 23 598549 24 441512 25 320753 26 229352 27 162965 28 114509 29 82315 30 59982 31 45924 32 35868 33 29228 34 24908 35 21548 36 19227 37 17771 38 16118 39 14687 40 13796 41 12732 42 12016 43 11355 44 10898 45 10550 46 10051 47 9558 48 9439 49 9058 50 8961 51 8637 52 8455 53 8287 54 8071 55 8004 56 7848 57 7638 58 7689 59 7596 60 7466 61 7337 62 7074 63 7077 64 6963 65 6550 66 6353 67 6199 68 6066 69 5903 70 5684 71 5718 72 5443 73 5419 74 5139 75 5020 76 4881 77 4950 78 4574 79 4548 80 4561 81 4415 82 4438 83 4185 84 3952 85 3792 86 3665 87 3499 88 3460 89 3407 90 3288 91 3199 92 3171 93 3143 94 3096 95 3109 96 3136 97 2924 98 2885 99 2819 100 2932 101 2892 102 2840 103 2861 104 2952 105 2924 106 2779 107 2870 108 2717 109 2741 110 2650 111 2728 112 2690 113 2568 114 2670 115 2642 116 2505 117 2478 118 2571 119 2432 120 2453 121 2381 122 2468 123 2505 124 2475 125 2455 126 2389 127 2397 128 2407 129 2382 130 2309 131 2408 132 2364 133 2262 134 2289 135 2359 136 2172 137 2124 138 2211 139 2188 140 2312 141 2229 142 2302 143 2369 144 2436 145 2436 146 2444 147 2516 148 2523 149 2599 150 2760 151 2654 152 2742 153 2791 154 2874 155 2889 156 2874 157 2926 158 2912 159 2972 160 3004 161 3020 162 3012 163 2992 164 2901 165 2983 166 2979 167 3061 168 3172 169 3170 170 3040 171 3109 172 3133 173 3168 174 3260 175 3211 176 3148 177 3136 178 3078 179 3130 180 3070 181 3114 182 3068 183 3055 184 2932 185 2903 186 2958 187 2838 188 2885 189 2810 190 2809 191 2734 192 2624 193 2663 194 2560 195 2537 196 2515 197 2491 198 2469 199 2321 200 2300 201 2240 202 2162 203 2126 204 2138 205 1999 206 1962 207 1999 208 1940 209 1878 210 1939 211 1859 212 1821 213 1778 214 1721 215 1705 216 1654 217 1607 218 1579 219 1647 220 1526 221 1490 222 1519 223 1471 224 1394 225 1367 226 1234 227 1362 228 1276 229 1246 230 1183 231 1220 232 1183 233 1141 234 1111 235 1181 236 1129 237 1154 238 1107 239 1081 240 1032 241 1100 242 1053 243 977 244 1045 245 976 246 949 247 924 248 858 249 873 250 191763