#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00913/HGDP00913.cram --algo AlignmentStat HGDP/HGDP00913/QCmetrics/HGDP00913.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	377919220	377919220	1.000000	0	377743168	0.999534	56444664500	352050630	52882010724	51679345566	0.000000	0.005042	0.004271	0.000248	151.000000	375530375	0.994142	0	0.500065	0.022906	0.000001	
SECOND_OF_PAIR	377919220	377919220	1.000000	0	375555103	0.993744	55065105974	349065334	51676331053	48550566471	0.000000	0.010713	0.009916	0.000237	151.000000	375530375	0.999934	0	0.499410	0.024430	0.000296	
PAIR	755838440	755838440	1.000000	0	753298271	0.996639	111509770474	701115964	104558341777	100229912037	0.000000	0.007843	0.007061	0.000243	151.000000	751060750	0.997030	0	0.499739	0.023666	0.000149