#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i HGDP/HGDP00913/HGDP00913.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP00913/QCmetrics/HGDP00913.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 14.872 5.1705 15 3 0 0.13414 0.0029041 0.035781 0.0051298 7.8397e-05 0.17803 0.99729 0.98667 0.89713 0.5151 0.1378 0.021084 0.0050904 0.0019012 0.0010168 0.00063235 0.00042594 0.00029284 0.00021655 0.00017178 0.98776 19 coverage high_quality_coverage_count 0 411963 1 334692 2 348961 3 403402 4 528784 5 801671 6 1333580 7 2257583 8 3667455 9 5559286 10 7790980 11 10118928 12 12179185 13 13656756 14 14366884 15 14247490 16 13324553 17 11811310 18 9972342 19 8036860 20 6189351 21 4569024 22 3248920 23 2244179 24 1502975 25 979357 26 628928 27 400215 28 256709 29 167692 30 114252 31 81662 32 60958 33 48603 34 39810 35 35117 36 30678 37 27565 38 24643 39 21836 40 19737 41 17643 42 16100 43 14500 44 13602 45 12354 46 11356 47 10482 48 9570 49 9191 50 8332 51 7598 52 6782 53 6490 54 5762 55 5241 56 5112 57 4622 58 4465 59 4073 60 3828 61 3657 62 3536 63 3369 64 3174 65 2995 66 2967 67 2738 68 2588 69 2546 70 2489 71 2423 72 2347 73 2245 74 2016 75 1952 76 1881 77 1713 78 1630 79 1551 80 1485 81 1374 82 1304 83 1251 84 1223 85 1082 86 1047 87 1003 88 964 89 872 90 828 91 783 92 718 93 738 94 670 95 677 96 625 97 599 98 638 99 534 100 608 101 548 102 528 103 519 104 513 105 502 106 472 107 441 108 440 109 382 110 387 111 334 112 374 113 333 114 310 115 320 116 292 117 300 118 320 119 271 120 280 121 337 122 323 123 254 124 307 125 260 126 287 127 265 128 244 129 255 130 296 131 280 132 288 133 303 134 262 135 279 136 258 137 260 138 270 139 232 140 254 141 245 142 216 143 245 144 233 145 190 146 234 147 237 148 195 149 209 150 198 151 170 152 193 153 154 154 167 155 166 156 151 157 142 158 136 159 151 160 160 161 143 162 131 163 172 164 109 165 141 166 166 167 124 168 102 169 113 170 102 171 101 172 85 173 107 174 102 175 106 176 81 177 97 178 87 179 78 180 97 181 76 182 73 183 75 184 70 185 72 186 103 187 79 188 82 189 90 190 89 191 96 192 74 193 84 194 79 195 79 196 76 197 48 198 50 199 42 200 55 201 41 202 51 203 53 204 49 205 57 206 45 207 62 208 56 209 49 210 53 211 66 212 66 213 64 214 71 215 72 216 61 217 50 218 56 219 51 220 58 221 44 222 49 223 39 224 48 225 40 226 41 227 48 228 36 229 30 230 35 231 41 232 33 233 38 234 28 235 37 236 29 237 33 238 48 239 39 240 25 241 37 242 24 243 22 244 29 245 28 246 34 247 37 248 29 249 32 250 2450